Deprecated alias for full_subsets_gam. Retained because
full.subsets.gam is used directly in the companion docs repository's
published case studies (https://github.com/beckyfisher/FSSgam), e.g.
case-study-2.Rmd. New code should call full_subsets_gam
directly.
Arguments
- ...
Arguments passed on to
full_subsets_gam.
Value
See full_subsets_gam.
Examples
library(mgcv)
data(case_study1)
use.dat <- case_study1
use.dat$site <- as.factor(use.dat$site)
test.fit <- gam(Herbivore.abundance ~ s(depth, k = 3, bs = "cr") + s(site, bs = "re"),
family = tw(), data = use.dat)
full.subsets.gam(
use.dat = use.dat,
test.fit = test.fit,
pred.vars.cont = c("complexity", "depth"),
pred.vars.fact = "ZONE",
null.terms = "s(site,bs='re')",
max.predictors = 2,
k = 3
)
#> Warning: 'full.subsets.gam' is deprecated.
#> Use 'full_subsets_gam' instead.
#> See help("Deprecated")
#>
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#> $mod.data.out
#> modname
#> null null
#> complexity complexity
#> depth depth
#> ZONE ZONE
#> ZONE+complexity ZONE+complexity
#> ZONE+depth ZONE+depth
#> ZONE+complexity.by.ZONE ZONE+complexity.by.ZONE
#> ZONE+depth.by.ZONE ZONE+depth.by.ZONE
#> formula
#> null s(site, bs = "re")
#> complexity s(complexity, k = 3, bs = "cr") + s(site, bs = "re")
#> depth s(depth, k = 3, bs = "cr") + s(site, bs = "re")
#> ZONE ZONE + s(site, bs = "re")
#> ZONE+complexity s(complexity, k = 3, bs = "cr") + ZONE + s(site, bs = "re")
#> ZONE+depth s(depth, k = 3, bs = "cr") + ZONE + s(site, bs = "re")
#> ZONE+complexity.by.ZONE s(complexity, by = ZONE, k = 3, bs = "cr") + ZONE + s(site, bs = "re")
#> ZONE+depth.by.ZONE s(depth, by = ZONE, k = 3, bs = "cr") + ZONE + s(site, bs = "re")
#> AICc BIC r2.vals r2.vals.unique edf
#> null 601.8165 613.9550 0.13574 NA 2.93
#> complexity 530.3521 546.5630 0.55313 NA 5.15
#> depth 604.2478 620.2653 0.17579 NA 4.98
#> ZONE 603.0187 616.7110 0.13529 NA 4.02
#> ZONE+complexity 531.1829 548.2208 0.55773 NA 5.94
#> ZONE+depth 604.7738 621.8040 0.17570 NA 5.94
#> ZONE+complexity.by.ZONE 531.6302 549.9272 0.53534 NA 6.83
#> ZONE+depth.by.ZONE 600.4762 619.5704 0.23486 NA 7.56
#> edf.less.1 delta.AICc delta.BIC wi.AICc wi.BIC
#> null 0 71.464 67.392 0.000 0.000
#> complexity 0 0.000 0.000 0.457 0.616
#> depth 0 73.896 73.702 0.000 0.000
#> ZONE 0 72.667 70.148 0.000 0.000
#> ZONE+complexity 0 0.831 1.658 0.302 0.269
#> ZONE+depth 0 74.422 75.241 0.000 0.000
#> ZONE+complexity.by.ZONE 0 1.278 3.364 0.241 0.115
#> ZONE+depth.by.ZONE 0 70.124 73.007 0.000 0.000
#> complexity depth ZONE
#> null 0 0 0
#> complexity 1 0 0
#> depth 0 1 0
#> ZONE 0 0 1
#> ZONE+complexity 1 0 1
#> ZONE+depth 0 1 1
#> ZONE+complexity.by.ZONE 1 0 1
#> ZONE+depth.by.ZONE 0 1 1
#>
#> $used.data
#> ZONE site depth SA complexity rugosity LC HC macro
#> 1 FISHED MESA 3.2 321.83444 3.5 1.643836 0.0 0.0 0.0
#> 2 FISHED MESA 3.9 309.10746 4.5 1.714286 20.0 16.0 2.0
#> 3 FISHED MESA 3.9 118.71986 2.5 1.395349 38.0 0.0 0.0
#> 4 FISHED MESA 1.7 252.36261 1.0 1.045296 0.0 0.0 67.0
#> 5 FISHED MESA 3.2 132.35994 0.5 1.052632 0.0 0.0 69.0
#> 6 SANCTUARY MANGROVE 2.1 149.24581 3.0 1.967213 4.0 6.0 6.0
#> 7 SANCTUARY MANGROVE 2.5 344.89786 3.5 1.538462 24.0 2.0 24.0
#> 8 SANCTUARY MANGROVE 2.9 61.93655 2.0 1.363636 4.0 1.0 20.0
#> 9 SANCTUARY MANGROVE 3.1 380.20034 1.0 1.200000 2.0 6.0 75.0
#> 10 SANCTUARY MANGROVE 3.7 188.89879 2.5 1.626016 48.6 0.0 8.0
#> 11 SANCTUARY MANGROVE 4.5 436.68381 3.5 2.181818 3.0 5.6 18.4
#> 12 FISHED NTH MANGROVE 3.5 83.51676 2.5 1.846154 0.0 80.0 0.0
#> 13 SANCTUARY MANGROVE 3.1 54.72278 3.5 1.363636 34.0 0.0 9.6
#> 14 FISHED NTH MANGROVE 3.0 88.19923 2.5 1.237113 0.0 5.6 0.0
#> 15 FISHED NTH MANGROVE 3.3 110.42952 2.0 1.239669 3.6 14.0 4.0
#> 16 FISHED NTH MANGROVE 4.1 62.63569 1.0 1.149425 0.0 40.0 0.0
#> 17 FISHED MESA 2.0 68.95717 2.0 1.357466 7.0 3.0 17.0
#> 18 FISHED MESA 3.0 136.83400 3.5 1.428571 40.0 14.0 2.0
#> 19 FISHED MESA 2.0 517.59368 0.0 1.034483 0.0 0.0 22.0
#> 20 FISHED MESA 2.1 405.58800 0.0 1.094891 0.0 5.0 74.0
#> 21 FISHED MESA 3.2 136.11094 4.0 1.769912 48.0 0.0 0.0
#> 22 SANCTUARY MANDU 2.1 164.04628 1.0 1.158301 0.0 6.0 46.0
#> 23 SANCTUARY MANDU 2.2 257.49206 3.0 1.500000 28.0 4.0 34.0
#> 24 SANCTUARY MANDU 1.7 296.18133 3.0 1.463415 80.0 0.0 0.0
#> 25 SANCTUARY MANDU 1.4 288.81810 0.0 1.071429 0.0 0.0 26.0
#> 26 FISHED NTH MANDU 3.2 191.68524 3.5 1.518987 26.0 6.0 4.0
#> 27 FISHED MESA 2.1 115.56878 0.5 1.081081 0.0 0.0 22.0
#> 28 SANCTUARY JURABI 3.8 167.13997 3.0 1.415094 18.0 6.0 0.0
#> 29 SANCTUARY JURABI 3.7 235.32776 3.5 1.284797 0.0 28.0 0.0
#> 30 SANCTUARY JURABI 3.6 224.16101 2.0 1.086957 0.0 0.0 52.0
#> 31 SANCTUARY JURABI 3.4 475.01497 1.0 1.140684 0.0 0.0 34.0
#> 32 SANCTUARY JURABI 4.1 100.49147 2.0 1.310044 6.0 2.0 0.0
#> 33 SANCTUARY JURABI 3.6 109.62320 1.5 1.181102 0.0 0.0 22.0
#> 34 FISHED MESA 3.7 74.20490 3.0 1.276596 6.0 4.0 4.0
#> 35 FISHED MESA 2.9 135.40590 4.0 1.304348 8.0 10.0 0.0
#> 36 FISHED MESA 2.1 98.84527 0.5 1.034483 0.0 0.0 44.0
#> 37 SANCTUARY MANGROVE 2.6 32.99946 3.0 1.176471 6.0 2.0 10.0
#> 38 SANCTUARY MANGROVE 1.8 71.59080 0.0 1.008403 0.0 0.0 30.0
#> 39 SANCTUARY MANGROVE 2.2 76.09548 2.5 1.333333 12.0 2.0 24.0
#> 40 SANCTUARY MANGROVE 2.2 159.26292 3.5 1.518987 8.0 0.0 2.0
#> 41 SANCTUARY MANGROVE 1.8 339.83030 4.0 1.428571 0.0 12.0 8.0
#> 42 FISHED NTH MANGROVE 3.6 51.51412 2.0 1.071429 0.0 4.0 70.0
#> 43 FISHED NTH MANGROVE 2.7 94.46148 3.0 1.428571 0.0 0.0 16.0
#> 44 FISHED NTH MANGROVE 2.5 248.59391 3.0 1.538462 0.0 0.0 58.0
#> 45 FISHED NTH MANGROVE 2.0 90.19713 0.0 1.034483 0.0 0.0 62.0
#> 46 SANCTUARY MANDU 1.8 23.64948 1.5 1.363636 0.0 0.0 52.0
#> 47 SANCTUARY MANDU 2.4 142.37115 2.5 1.428571 7.0 8.0 8.0
#> 48 SANCTUARY MANDU 2.0 146.10886 3.5 2.068966 0.0 30.0 0.0
#> 49 FISHED NTH MANDU 2.1 131.59072 2.5 1.463415 0.0 4.0 30.0
#> 50 FISHED NTH MANDU 2.1 245.86162 3.5 1.621622 0.0 14.0 4.0
#> 51 FISHED NTH MANDU 1.8 104.98107 0.5 1.025641 0.0 0.0 42.0
#> 52 SANCTUARY JURABI 3.5 68.67859 3.5 1.578947 6.0 2.0 0.0
#> 53 SANCTUARY JURABI 3.1 93.17857 2.5 1.304348 24.0 0.0 4.0
#> 54 SANCTUARY JURABI 3.9 16.65045 2.0 1.250000 6.0 1.0 0.0
#> 55 SANCTUARY MANDU 2.2 35.70543 2.5 1.666667 0.0 32.0 0.0
#> 56 SANCTUARY MANDU 1.8 189.27931 3.5 1.538462 16.0 12.0 0.0
#> 57 SANCTUARY MANDU 2.1 125.48754 0.5 1.090909 0.0 0.0 58.0
#> 58 SANCTUARY MANDU 1.7 74.33842 0.5 1.111111 0.0 4.0 30.0
#> 59 SANCTUARY MANDU 2.4 121.48344 3.0 1.578947 0.0 22.0 0.0
#> 60 FISHED NTH MANGROVE 2.7 22.45597 1.5 1.071429 0.0 0.0 30.0
#> 61 FISHED NTH MANGROVE 4.0 128.19227 3.5 1.538462 20.0 24.0 0.0
#> 62 FISHED NTH MANGROVE 3.7 323.68014 3.0 1.463415 0.0 2.0 0.0
#> 63 FISHED NTH MANGROVE 3.5 181.77032 3.0 1.714286 0.0 6.0 0.0
#> 64 FISHED NTH MANDU 1.8 178.87941 1.5 1.200000 0.0 0.0 64.0
#> 65 FISHED NTH MANDU 2.1 106.65742 3.0 1.333333 0.0 0.0 36.0
#> 66 FISHED NTH MANDU 2.2 247.92257 3.0 1.463415 4.0 10.0 0.0
#> 67 FISHED NTH MANDU 2.9 51.58278 3.0 1.875000 4.0 0.0 0.0
#> 68 FISHED NTH MANDU 3.1 385.04238 4.0 1.363636 22.0 0.0 34.0
#> SCORE1 SCORE2 Herbivore.abundance Invertivore.abundance
#> 1 1.2200 -0.00782 18 54
#> 2 2.4400 -0.00349 58 252
#> 3 1.1000 -1.59000 22 27
#> 4 -2.7200 -0.15700 3 13
#> 5 -2.9600 -0.11600 0 4
#> 6 1.4600 0.24200 85 210
#> 7 1.0600 -1.02000 46 146
#> 8 -0.2760 -0.10400 19 25
#> 9 -2.2400 0.13500 34 64
#> 10 1.5500 -2.03000 14 50
#> 11 1.5900 0.19100 48 91
#> 12 2.6300 4.87000 13 66
#> 13 1.2000 -1.55000 30 44
#> 14 0.0904 0.33600 38 88
#> 15 0.0275 0.71400 18 50
#> 16 -0.1380 2.49000 11 27
#> 17 -0.1250 -0.10400 19 30
#> 18 1.8900 -0.93500 52 66
#> 19 -2.2400 0.09120 0 11
#> 20 -3.0500 0.22400 6 14
#> 21 2.5800 -2.09000 39 65
#> 22 -1.7800 0.31200 32 31
#> 23 0.6730 -1.07000 49 99
#> 24 2.3000 -3.42000 48 46
#> 25 -2.1900 0.09030 3 18
#> 26 1.5700 -0.80000 54 163
#> 27 -1.8500 0.06200 3 27
#> 28 1.0900 -0.41700 20 39
#> 29 1.1000 1.59000 43 68
#> 30 -1.8100 -0.18100 20 27
#> 31 -1.6900 -0.00734 2 27
#> 32 0.0951 -0.07070 11 9
#> 33 -1.0900 0.00160 13 28
#> 34 0.4150 -0.06610 27 45
#> 35 1.1700 0.13400 63 54
#> 36 -2.4900 -0.03330 6 13
#> 37 -0.0195 -0.23300 33 38
#> 38 -2.5100 0.05260 0 6
#> 39 -0.0260 -0.45400 30 25
#> 40 1.1400 -0.37800 38 71
#> 41 1.1400 0.59400 93 277
#> 42 -2.1700 -0.01280 3 47
#> 43 0.2880 -0.05580 27 55
#> 44 -0.4180 -0.18600 30 68
#> 45 -3.1000 -0.05160 0 9
#> 46 -1.2900 -0.05990 12 21
#> 47 0.5370 0.19400 29 34
#> 48 2.3100 1.83000 69 43
#> 49 -0.0907 0.18500 47 80
#> 50 1.3800 0.80700 98 169
#> 51 -2.4800 -0.02950 1 8
#> 52 1.2800 -0.15600 44 25
#> 53 0.5390 -1.02000 46 48
#> 54 -0.0707 -0.14500 8 19
#> 55 1.4400 1.99000 30 29
#> 56 1.6100 0.00253 35 68
#> 57 -2.5900 -0.06310 2 7
#> 58 -1.8400 0.28100 2 8
#> 59 1.3400 1.34000 13 27
#> 60 -1.6100 -0.06180 0 10
#> 61 1.9300 0.54400 24 55
#> 62 0.7380 0.12700 61 153
#> 63 1.2200 0.40500 54 72
#> 64 -1.9400 -0.14300 10 32
#> 65 -0.3420 -0.14700 40 44
#> 66 0.9780 0.43100 71 55
#> 67 1.3800 -0.10300 20 24
#> 68 0.6530 -1.17000 86 134
#> Piscivore.abundance Planktivore.abundance Herbivore.biomass
#> 1 30 288 1221.26602
#> 2 66 196 12321.34367
#> 3 1 122 9475.76226
#> 4 4 0 473.19268
#> 5 0 0 0.00000
#> 6 8 80 8672.12624
#> 7 65 286 4438.89517
#> 8 1 47 461.30056
#> 9 2 64 589.29566
#> 10 1 72 1116.00484
#> 11 54 209 5330.11754
#> 12 19 550 659.49001
#> 13 2 75 13663.61201
#> 14 4 135 19267.44368
#> 15 14 136 1277.21068
#> 16 2 14 142.24824
#> 17 5 8 345.39049
#> 18 59 624 2094.78041
#> 19 0 1 0.00000
#> 20 5 11 1658.89489
#> 21 3 241 7390.80169
#> 22 5 23 1772.46304
#> 23 18 129 12806.41833
#> 24 2 29 8343.71297
#> 25 3 1 292.04715
#> 26 38 280 5886.49529
#> 27 4 0 351.29636
#> 28 5 0 2941.87591
#> 29 6 41 8358.85011
#> 30 5 42 2130.57399
#> 31 9 76 434.44048
#> 32 1 22 693.31316
#> 33 4 12 1109.14863
#> 34 12 262 2371.21813
#> 35 6 194 9025.61898
#> 36 30 3 89.99833
#> 37 5 11 4690.14049
#> 38 0 0 0.00000
#> 39 12 132 4977.87090
#> 40 12 199 7806.16908
#> 41 46 205 10043.70399
#> 42 4 12 915.29957
#> 43 3 89 3901.58471
#> 44 6 86 7624.26587
#> 45 0 0 0.00000
#> 46 1 2 697.54100
#> 47 1 50 1032.75346
#> 48 4 33 12744.96968
#> 49 9 14 5507.43485
#> 50 24 90 16834.03870
#> 51 0 0 534.62224
#> 52 3 3 9472.66874
#> 53 35 602 13787.90479
#> 54 2 4 3129.13641
#> 55 4 45 4958.27086
#> 56 10 55 2962.86207
#> 57 2 6 545.63788
#> 58 3 1 288.63227
#> 59 4 27 1345.25981
#> 60 1 33 0.00000
#> 61 10 150 4581.57478
#> 62 229 106 15379.43420
#> 63 7 107 15925.84843
#> 64 9 22 1049.28925
#> 65 12 61 3333.30344
#> 66 2 218 8010.40146
#> 67 8 105 1099.82292
#> 68 12 202 19124.63243
#> Invertivore.biomass Piscivore.biomass Planktivore.biomass
#> 1 4724.72394 3364.995174 10444.547350
#> 2 22065.53828 11102.265070 2565.598694
#> 3 16687.42007 65.032060 2025.822123
#> 4 633.41995 437.724781 0.000000
#> 5 445.45148 0.000000 0.000000
#> 6 15458.46719 232.574849 3324.792220
#> 7 21960.41299 7486.252267 6996.160422
#> 8 1097.15729 43.188831 352.198147
#> 9 3415.47996 11.033823 212.875592
#> 10 5970.92133 251.552148 438.826833
#> 11 14939.55962 7528.882252 3271.764668
#> 12 4364.26506 1542.962813 4834.142689
#> 13 15135.23860 303.180173 1800.770512
#> 14 14044.66439 918.498976 1588.884565
#> 15 6743.62665 4581.361991 4630.976688
#> 16 603.13808 425.995509 40.903718
#> 17 838.23684 741.730954 77.157871
#> 18 4639.48603 8737.279021 8570.154587
#> 19 584.22670 0.000000 2.447276
#> 20 5272.54524 1248.245089 120.638318
#> 21 3966.23542 444.035931 5894.024441
#> 22 1332.31205 577.823779 121.797628
#> 23 11206.83537 787.674264 1123.240980
#> 24 3698.10591 1145.983808 381.785065
#> 25 191.01323 688.734817 2.093062
#> 26 9105.21989 72484.779400 7022.747589
#> 27 529.28767 287.208804 0.000000
#> 28 4535.50384 451.993676 0.000000
#> 29 4981.38080 1131.676338 1953.953348
#> 30 6023.06224 1457.164138 558.600000
#> 31 3860.00801 2670.895687 255.659034
#> 32 371.18500 124.827796 501.382200
#> 33 3050.82738 813.883554 41.751585
#> 34 2835.56622 1950.378852 8509.003663
#> 35 3144.97597 816.538835 2049.739582
#> 36 66.96136 118.567374 11.701137
#> 37 2915.73753 317.044032 272.158655
#> 38 83.79845 0.000000 0.000000
#> 39 1073.80203 1507.945419 3190.792956
#> 40 4955.72915 227.332930 3940.780294
#> 41 13920.16875 6945.401839 5342.955143
#> 42 1047.94820 412.032981 157.707413
#> 43 15067.24497 389.987748 2751.088325
#> 44 5038.40157 580.602071 3185.037271
#> 45 16.52421 0.000000 0.000000
#> 46 618.24909 27.129642 4.186124
#> 47 2020.89418 6.435908 154.957567
#> 48 5192.60000 1008.030507 234.478300
#> 49 2388.71761 1052.781185 129.659282
#> 50 7608.52332 2359.767985 1162.489716
#> 51 387.18156 0.000000 0.000000
#> 52 6984.73577 741.409371 123.156957
#> 53 8292.37163 4674.571751 6934.966326
#> 54 1162.33926 756.544266 121.333230
#> 55 137.22880 1138.818170 212.806942
#> 56 7473.90244 793.142385 718.255014
#> 57 848.03594 239.717133 29.667511
#> 58 933.93018 632.933705 1.347971
#> 59 3453.08026 32.687797 177.364700
#> 60 74.97125 7.537407 299.910347
#> 61 9062.73501 2176.892127 552.800944
#> 62 20539.10754 50338.413700 4229.137273
#> 63 2805.71613 560.008909 1251.178426
#> 64 2754.78323 724.264850 489.503660
#> 65 1789.92492 251.462539 603.152296
#> 66 4448.31141 449.248587 1083.167944
#> 67 1600.51803 896.055652 2111.212858
#> 68 144429.20740 1233.688056 4373.699001
#> sqrt.Herbivore.abundance sqrt.Invertivore.abundance sqrt.Piscivore.abundance
#> 1 4.242641 7.348469 5.477226
#> 2 7.615773 15.874508 8.124038
#> 3 4.690416 5.196152 1.000000
#> 4 1.732051 3.605551 2.000000
#> 5 0.000000 2.000000 0.000000
#> 6 9.219544 14.491377 2.828427
#> 7 6.782330 12.083046 8.062258
#> 8 4.358899 5.000000 1.000000
#> 9 5.830952 8.000000 1.414214
#> 10 3.741657 7.071068 1.000000
#> 11 6.928203 9.539392 7.348469
#> 12 3.605551 8.124038 4.358899
#> 13 5.477226 6.633250 1.414214
#> 14 6.164414 9.380832 2.000000
#> 15 4.242641 7.071068 3.741657
#> 16 3.316625 5.196152 1.414214
#> 17 4.358899 5.477226 2.236068
#> 18 7.211103 8.124038 7.681146
#> 19 0.000000 3.316625 0.000000
#> 20 2.449490 3.741657 2.236068
#> 21 6.244998 8.062258 1.732051
#> 22 5.656854 5.567764 2.236068
#> 23 7.000000 9.949874 4.242641
#> 24 6.928203 6.782330 1.414214
#> 25 1.732051 4.242641 1.732051
#> 26 7.348469 12.767145 6.164414
#> 27 1.732051 5.196152 2.000000
#> 28 4.472136 6.244998 2.236068
#> 29 6.557439 8.246211 2.449490
#> 30 4.472136 5.196152 2.236068
#> 31 1.414214 5.196152 3.000000
#> 32 3.316625 3.000000 1.000000
#> 33 3.605551 5.291503 2.000000
#> 34 5.196152 6.708204 3.464102
#> 35 7.937254 7.348469 2.449490
#> 36 2.449490 3.605551 5.477226
#> 37 5.744563 6.164414 2.236068
#> 38 0.000000 2.449490 0.000000
#> 39 5.477226 5.000000 3.464102
#> 40 6.164414 8.426150 3.464102
#> 41 9.643651 16.643317 6.782330
#> 42 1.732051 6.855655 2.000000
#> 43 5.196152 7.416198 1.732051
#> 44 5.477226 8.246211 2.449490
#> 45 0.000000 3.000000 0.000000
#> 46 3.464102 4.582576 1.000000
#> 47 5.385165 5.830952 1.000000
#> 48 8.306624 6.557439 2.000000
#> 49 6.855655 8.944272 3.000000
#> 50 9.899495 13.000000 4.898979
#> 51 1.000000 2.828427 0.000000
#> 52 6.633250 5.000000 1.732051
#> 53 6.782330 6.928203 5.916080
#> 54 2.828427 4.358899 1.414214
#> 55 5.477226 5.385165 2.000000
#> 56 5.916080 8.246211 3.162278
#> 57 1.414214 2.645751 1.414214
#> 58 1.414214 2.828427 1.732051
#> 59 3.605551 5.196152 2.000000
#> 60 0.000000 3.162278 1.000000
#> 61 4.898979 7.416198 3.162278
#> 62 7.810250 12.369317 15.132746
#> 63 7.348469 8.485281 2.645751
#> 64 3.162278 5.656854 3.000000
#> 65 6.324555 6.633250 3.464102
#> 66 8.426150 7.416198 1.414214
#> 67 4.472136 4.898979 2.828427
#> 68 9.273618 11.575837 3.464102
#> sqrt.Planktivore.abundance log.Herbivore.biomass log.Invertivore.biomass
#> 1 16.970563 3.087166 3.674468
#> 2 14.000000 4.090693 4.343734
#> 3 11.045361 3.976660 4.222415
#> 4 0.000000 2.675955 2.802377
#> 5 0.000000 0.000000 2.649774
#> 6 8.944272 3.938176 4.189195
#> 7 16.911535 3.647373 4.341660
#> 8 6.855655 2.664924 3.040665
#> 9 8.000000 2.771070 3.533579
#> 10 8.485281 3.048055 3.776114
#> 11 14.456832 3.726818 4.174367
#> 12 23.452079 2.819866 3.640011
#> 13 8.660254 4.135597 4.180018
#> 14 11.618950 4.284847 4.147542
#> 15 11.661904 3.106602 3.828958
#> 16 3.741657 2.156089 2.781136
#> 17 2.828427 2.539566 2.923885
#> 18 24.979992 3.321346 3.666563
#> 19 1.000000 0.000000 2.767324
#> 20 3.316625 3.220081 3.722103
#> 21 15.524175 3.868750 3.598488
#> 22 4.795832 3.248822 3.124932
#> 23 11.357817 4.107462 4.049522
#> 24 5.385165 3.921411 3.568097
#> 25 1.000000 2.466938 2.283331
#> 26 16.733201 3.769931 3.959338
#> 27 0.000000 2.546908 2.724512
#> 28 0.000000 3.468772 3.656721
#> 29 6.403124 3.922198 3.697437
#> 30 6.480741 3.328700 3.779889
#> 31 8.717798 2.638929 3.586701
#> 32 4.690416 2.841555 2.570759
#> 33 3.464102 3.045381 3.484560
#> 34 16.186414 3.375155 3.452793
#> 35 13.928388 3.955525 3.497755
#> 36 1.732051 1.959033 1.832262
#> 37 3.316625 3.671278 3.464897
#> 38 0.000000 0.000000 1.928388
#> 39 11.489125 3.697131 3.031328
#> 40 14.106736 3.892494 3.695195
#> 41 14.317821 4.001937 4.143676
#> 42 3.464102 2.962037 3.020754
#> 43 9.433981 3.591352 4.178063
#> 44 9.273618 3.882255 3.702379
#> 45 0.000000 0.000000 1.243639
#> 46 1.414214 2.844192 2.791865
#> 47 7.071068 3.014417 3.305758
#> 48 5.744563 4.105373 3.715468
#> 49 3.741657 3.741028 3.378347
#> 50 9.486833 4.226214 3.881357
#> 51 0.000000 2.728859 2.589035
#> 52 1.732051 3.976518 3.844212
#> 53 24.535688 4.139530 3.918731
#> 54 2.000000 3.495563 3.065706
#> 55 6.708204 3.695418 2.140599
#> 56 7.416198 3.471858 3.873606
#> 57 2.449490 2.737700 2.928926
#> 58 1.000000 2.461847 2.970779
#> 59 5.196152 3.129129 3.538332
#> 60 5.744563 0.000000 1.880649
#> 61 12.247449 3.661110 3.957307
#> 62 10.295630 4.186969 4.312603
#> 63 10.344080 4.202130 3.448198
#> 64 4.690416 3.021309 3.440245
#> 65 7.810250 3.523005 3.253077
#> 66 14.764823 3.903708 3.648293
#> 67 10.246951 3.041717 3.204532
#> 68 14.212670 4.281616 5.159658
#> log.Piscivore.biomass log.Planktivore.biomass
#> 1 3.527113 4.0189312
#> 2 4.045451 3.4093580
#> 3 1.819755 3.3068156
#> 4 2.642192 0.0000000
#> 5 0.000000 0.0000000
#> 6 2.368426 3.5218951
#> 7 3.874322 3.8449218
#> 8 1.645313 2.5480184
#> 9 1.080404 2.3301612
#> 10 2.402351 2.6432817
#> 11 3.876788 3.5149148
#> 12 3.188637 3.6844093
#> 13 2.483131 3.2556995
#> 14 2.963551 3.2013656
#> 15 3.661089 3.6657664
#> 16 2.630423 1.6222526
#> 17 2.870832 1.8929727
#> 18 3.941426 3.9330393
#> 19 0.000000 0.5374761
#> 20 3.096648 2.0850704
#> 21 2.648395 3.7704856
#> 22 2.762546 2.0891900
#> 23 2.896898 3.0508594
#> 24 3.059557 2.5829550
#> 25 2.838682 0.4903886
#> 26 4.860253 3.8465689
#> 27 2.459707 0.0000000
#> 28 2.656092 0.0000000
#> 29 3.054106 3.2911364
#> 30 3.163806 2.7478777
#> 31 3.426819 2.4093566
#> 32 2.099777 2.7010342
#> 33 2.911096 1.6309522
#> 34 3.290342 3.9299297
#> 35 2.912508 3.3119105
#> 36 2.077613 1.1038426
#> 37 2.502487 2.4364150
#> 38 0.000000 0.0000000
#> 39 3.178674 3.5040347
#> 40 2.358569 3.5956924
#> 41 3.841760 3.7278628
#> 42 2.615985 2.2005972
#> 43 2.592163 3.4396624
#> 44 2.764626 3.5032509
#> 45 0.000000 0.0000000
#> 46 1.449164 0.7148429
#> 47 0.871334 2.1930064
#> 48 3.003904 2.3719509
#> 49 3.022750 2.1161403
#> 50 3.373053 3.0657625
#> 51 0.000000 0.0000000
#> 52 2.870643 2.0939711
#> 53 3.669835 3.8411070
#> 54 2.879408 2.0875444
#> 55 3.056836 2.3300218
#> 56 2.899898 2.8568829
#> 57 2.381507 1.4866785
#> 58 2.802044 0.3706927
#> 59 1.527473 2.2513089
#> 60 0.931326 2.4784371
#> 61 3.338036 2.7433537
#> 62 4.701908 3.6263545
#> 63 2.748970 3.0976662
#> 64 2.860497 2.6906423
#> 65 2.402197 2.7811464
#> 66 2.653452 3.0350966
#> 67 2.952819 3.3247377
#> 68 3.091557 3.6409482
#>
#> $predictor.correlations
#> complexity depth ZONE
#> complexity 1.00000000 0.33364348 0.01410832
#> depth 0.33364348 1.00000000 0.08234682
#> ZONE 0.01410832 0.08234682 0.99999940
#>
#> $failed.models
#> named list()
#>
#> $success.models
#> $success.models$null
#>
#> Family: Tweedie(p=1.469)
#> Link function: log
#>
#> Formula:
#> Herbivore.abundance ~ s(site, bs = "re")
#>
#> Estimated degrees of freedom:
#> 1.93 total = 2.93
#>
#> REML score: 297.6204
#>
#> $success.models$complexity
#>
#> Family: Tweedie(p=1.265)
#> Link function: log
#>
#> Formula:
#> Herbivore.abundance ~ s(complexity, k = 3, bs = "cr") + s(site,
#> bs = "re")
#>
#> Estimated degrees of freedom:
#> 1.73 2.42 total = 5.15
#>
#> REML score: 261.5252
#>
#> $success.models$depth
#>
#> Family: Tweedie(p=1.465)
#> Link function: log
#>
#> Formula:
#> Herbivore.abundance ~ s(depth, k = 3, bs = "cr") + s(site, bs = "re")
#>
#> Estimated degrees of freedom:
#> 1.42 2.57 total = 4.98
#>
#> REML score: 297.5266
#>
#> $success.models$ZONE
#>
#> Family: Tweedie(p=1.469)
#> Link function: log
#>
#> Formula:
#> Herbivore.abundance ~ ZONE + s(site, bs = "re")
#>
#> Estimated degrees of freedom:
#> 2.02 total = 4.02
#>
#> REML score: 297.9798
#>
#> $success.models$`ZONE+complexity`
#>
#> Family: Tweedie(p=1.267)
#> Link function: log
#>
#> Formula:
#> Herbivore.abundance ~ s(complexity, k = 3, bs = "cr") + ZONE +
#> s(site, bs = "re")
#>
#> Estimated degrees of freedom:
#> 1.71 2.23 total = 5.94
#>
#> REML score: 262.176
#>
#> $success.models$`ZONE+depth`
#>
#> Family: Tweedie(p=1.465)
#> Link function: log
#>
#> Formula:
#> Herbivore.abundance ~ s(depth, k = 3, bs = "cr") + ZONE + s(site,
#> bs = "re")
#>
#> Estimated degrees of freedom:
#> 1.47 2.47 total = 5.94
#>
#> REML score: 297.7074
#>
#> $success.models$`ZONE+complexity.by.ZONE`
#>
#> Family: Tweedie(p=1.262)
#> Link function: log
#>
#> Formula:
#> Herbivore.abundance ~ s(complexity, by = ZONE, k = 3, bs = "cr") +
#> ZONE + s(site, bs = "re")
#>
#> Estimated degrees of freedom:
#> 1.78 1.00 2.05 total = 6.83
#>
#> REML score: 261.0315
#>
#> $success.models$`ZONE+depth.by.ZONE`
#>
#> Family: Tweedie(p=1.45)
#> Link function: log
#>
#> Formula:
#> Herbivore.abundance ~ s(depth, by = ZONE, k = 3, bs = "cr") +
#> ZONE + s(site, bs = "re")
#>
#> Estimated degrees of freedom:
#> 1.71 1.00 2.85 total = 7.56
#>
#> REML score: 294.4957
#>
#>
#> $variable.importance
#> $variable.importance$aic
#> $variable.importance$aic$variable.weights.raw
#> complexity depth ZONE
#> 1.000 0.000 0.543
#>
#>
#> $variable.importance$bic
#> $variable.importance$bic$variable.weights.raw
#> complexity depth ZONE
#> 1.000 0.000 0.384
#>
#>
#>